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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009778768.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 67aa MW: 7559.91 Da PI: 10.5468 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80 | 1.6e-25 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie+ks rqvt++kRr+g++KKA+ LS+LCd++vav++fs +g+lye XP_009778768.1 9 KRIEEKSSRQVTLCKRRKGLIKKAKQLSILCDVDVAVVVFSDRGTLYES 57 79*********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.712 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-25 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-23 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
MGRKKVEMKR IEEKSSRQVT LCKRRKGLIK KAKQLSILCD VDVAVVVFSD RGTLYESSTP 60 SRDVSCA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_S | 5e-15 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-15 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-15 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
1tqe_P | 5e-15 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009778768.1 | 4e-41 | PREDICTED: MADS-box transcription factor 21-like isoform X1 | ||||
Swissprot | Q6R4R9 | 6e-22 | CALA_BRAOB; Truncated transcription factor CAULIFLOWER A | ||||
TrEMBL | Q6UGR2 | 1e-27 | Q6UGR2_PETHY; MADS-box protein 17 (Fragment) | ||||
STRING | Solyc05g015730.1.1 | 8e-26 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 1e-23 | MIKC_MADS family protein |